EPISNPmpi is a parallel computing program for epistasis testing in genome-wide association studies for supercomputers and commodity clusters.
Publications using this software are expected to reference the citation below.
Reference
Ma L., H.B. Runesha, D. Dvorkin, J.R. Garbe, and Y. Da. (2008) Parallel and serial computing tools for testing single-locus and epistatic SNP effects of quantitative traits in genome-wide association studies. BMC Bioinformatics 9:315. Article URL: www.biomedcentral.com/1471-2105/9/315.
Download
EPISNPmpi is available for download for parallel computing platforms listed below. Please contact [email protected] for questions, comments and suggestions.
| MPI Library | Compiler | Processor | Size | Binary |
|---|---|---|---|---|
| Voltaire MPI | Intel | Intel | 788 kB | EPISNPmpi_2.0_Voltaire_intel_intel.tar.gz |
| Voltaire MPI | Intel | AMD | 727 kB | EPISNPmpi_2.0_Voltaire intel_AMD.tar.gz |
| Voltaire MPI | Intel | Intel (EM64T) | 789 kB | EPISNPmpi_2.0_Voltaire suse_EM64T.tar.gz |
| PathMPI | Pathscale | AMD | 637 kB | EPISNPmpi_2.0_Pathscale_suse_AMD.tar.gz |
| IntelMPI | Intel | AMD | 727 kB | EPISNPmpi_2.0_intelMPI_suse_AMD.tar.gz |
| OpenMPI | Intel | Intel (EM64T) | 1.1 MB | EPISNPmpi_2.0_OpenMPI_suse_EM64T.tar.gz |
| IBM MPI | Intel | Power4 | 150 kB | EPISNPmpi_2.0_IBM_AIX_pwr.tar.gz |
| MPT | Intel | Itanium | 5.78 MB | EPISNPmpi_4.2.zip |
User Manual
epiSNP Manual (PDF, version 4.2, 154 kB)
General Page Media
