epiSNP is a computer package of serial computing programs for genome-wide testing of SNP epistasis and single-locus effects of complex or quantitative traits.
Publications using this software are expected to reference the citation below.
Reference
Ma L., H.B. Runesha, D. Dvorkin, J.R. Garbe, and Y. Da. (2008) Parallel and serial computing tools for testing single-locus and epistatic SNP effects of quantitative traits in genome-wide association studies. BMC Bioinformatics 9:315. Article URL: www.biomedcentral.com/1471-2105/9/315.
Download
epiSNP is available for download. Please contact [email protected] for questions, comments and suggestions.
| Operating system | Compiler | Processor | Size | Binary |
|---|---|---|---|---|
| Windows | Intel | Intel/AMD | 5.8 MB | epiSNP_v4.2_Windows.zip |
| Irix | SGI | MIPS | 1.21 MB | epiSNP_2.0_SGI_Irix_Mips.tar.gz |
| Linux (SUSE) | Intel | AMD | 2.85 MB | epiSNP_2.0_intel_suse_AMD.tar.gz |
| Linux (SUSE) | Intel | Intel (EM64T) | 1.96 MB | epiSNP_2.0_intel_suse_EM64T.tar.gz |
| Linux | Portland | Intel (32 bit) | 491 kB | epiSNP_2.0_Portland_Linux_Intel.tar.gz |
| Linux (SUSE) | Pathscale | AMD | 1.21 MB | epiSNP_2.0_Pathscale_suse_AMD.tar.gz |
| Unix (AIX) | XLF | Power4 | 820 kB | epiSNP_2.0_xlf_AIX_Power.tar |
| Unix (Solaris) | SUN | SPARC | 1.92 MB | epiSNP_2.0_Sun_Solaris_Sparc.tar.gz |
The file epiSNP_v4.2_Windows.zip (5.8 MB) has four executable for Windows: EPINET, CPUHD, EPISNPPLOT, and EPINET. Each of the other files has two executables: EPINET and CPUHD. Output files of EPISNP running on Linux or Unix system can be used for EPISNPPLOT and EPINET on a Windows computer.
User Manual
epiSNP Manual 4.2 (PDF, version 4.2)
epiSNP Manual 2.0 (PDF, version 2.0, 154 kB)
